prior PWM: structure-based informative priors

Predicted PWM: predictions using Gibbs sampling with informative priors

MacIsaac et al. PWM: predictions from MacIsaac et al., BMC Bioinformatics 2006, 7:113.

* marks literature motifs reported by MacIsaac et al.

PDB_mod:	Prior PWM:	TF_COND:	Predicted PWM:	TF :	MacIsaac et al. PWM:
1d66		GAL4_RAFF		GAL4
1hwt		HAP1_YPD		HAP1
2ere		LEU3_SM		LEU3
1pyi		PPR1_SGD		PPR1
1zme		PUT3_SM		PUT3
1hwt_CGG_N3		ARG81_SM		ARG81
1hwt_CGG_N7		ARO80_SM		ARO80
1pyi_N16		OAF1_YPD		OAF1
1pyi_N16		PIP2_YPD		PIP2
1pyi_TCCG_CGGA		PDR1_YPD		PDR1
1pyi_TCCG_CGGA		PDR3_YPD		PDR3*
1pyi_TCCG_CGGA		STB5_YPD		STB5
1pyi_TCCG_CGGA		YRR1_YPD		YRR1
1pyi_N0		RDS1_H2O2Hi		RDS1
1pyi_N5		SIP4_SM		SIP4
2ere		UGA3_RAPA		UGA3*
1pyi_N10		CHA4_SM		CHA4
1pyi_N12		THI2_Thi-		THI2
2ere_N23		WAR1_YPD		WAR1
1a0a		PHO4_Pi-		PHO4
1an2		CBF1_SM		CBF1
1nkp		INO2_YPD		INO2
1nkp		INO4_YPD		INO4
RTG1_RTG3		RTG1_RAPA		RTG1
RTG1_RTG3		RTG3_RAPA		RTG3
1am9		TYE7_YPD		TYE7
1an2		TYE7_YPD		TYE7
1am9		HMS1_YPD		HMS1
1an2		HMS1_YPD		HMS1
1ysa		GCN4_SM		GCN4
1gd2_short		CAD1_YPD		CAD1
1gd2		CIN5_H2O2Lo		CIN5
1gd2_short		YAP1_H2O2Lo		YAP1
1gd2_short		YAP3_YPD		YAP3*
1gd2_short		YAP5_YPD		YAP5
1gd2		YAP6_YPD		YAP6
1gd2_short		YAP7_H2O2Hi		YAP7
1gd2		YAP7_H2O2Hi		YAP7
1gd2_short		ARR1_YPD		ARR1
1dh3		ACA1_YPD		ACA1
1dh3		CST6_YPD		CST6
1dh3		SKO1_YPD		SKO1
1dh3		HAC1_YPD		HAC1
2dgc		MET28_YPD		MET28*
1mnm_MCM1		MCM1_Alpha		MCM1
1mnm_MCM1		ARG80_YPD		ARG80
1egw		RLM1_YPD		RLM1
1egw		SMP1_YPD		SMP1*
1mnn		NDT80_SGD		NDT80
1ign		RAP1_YPD		RAP1
1w0t_A		REB1_YPD		REB1
4gat		DAL80_RAPA		DAL80*
4gat		GAT1_RAPA		GAT1
4gat		GLN3_RAPA		GLN3
4gat		GZF3_RAPA		GZF3*
6gat		GAT3_YPD		GAT3
6gat		ASH1_BUT14		ASH1
3hts		HSF1_H2O2Lo		HSF1
3hts		MGA1_YPD		MGA1
3hts		SKN7_H2O2Lo		SKN7
1b8i		CUP9_YPD		CUP9
1fjl		PHO2_YPD		PHO2
2c6y		FKH1_YPD		FKH1
2c6y		FKH2_YPD		FKH2
2c6y		FHL1_YPD		FHL1
1dp7		RFX1_YPD		RFX1
1j47		ROX1_YPD		ROX1
--------	--------	--------	--------	--------	--------
1hwt_CGG_N3		ARG80_YPD		ARG80
1ysa		ARG80_YPD		ARG80
1mnm_MCM1		ARG81_SM		ARG81
1ysa		ARG81_SM		ARG81
2dgc		CBF1_SM		CBF1
1an2		MET28_YPD		MET28*
1an2		MET4_SM		MET4
2dgc		MET4_SM		MET4
1mnm		YHP1_YPD		YHP1*
1mnm		YOX1_YPD		YOX1
1ysa		RTG1_RAPA		RTG1
1ysa		RTG3_RAPA		RTG3