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prior PWM: structure-based informative priors

Predicted PWM: predictions using Gibbs sampling with informative priors

MacIsaac et al. PWM: predictions from MacIsaac et al., BMC Bioinformatics 2006, 7:113.

* marks literature motifs reported by MacIsaac et al.

PDB_mod: Prior PWM: TF_COND: Predicted PWM: TF : MacIsaac et al. PWM:
1d66 GAL4_RAFF GAL4 -
1hwt HAP1_YPD HAP1 -
2ere LEU3_SM LEU3 -
1pyi PPR1_SGD PPR1 -
1zme PUT3_SM PUT3 -
1hwt_CGG_N3 ARG81_SM ARG81 -
1hwt_CGG_N7 ARO80_SM ARO80 -
1pyi_N16 OAF1_YPD OAF1 -
1pyi_N16 PIP2_YPD PIP2 -
1pyi_TCCG_CGGA PDR1_YPD PDR1 -
1pyi_TCCG_CGGA PDR3_YPD PDR3* -
1pyi_TCCG_CGGA STB5_YPD STB5 -
1pyi_TCCG_CGGA YRR1_YPD YRR1 -
1pyi_N0 RDS1_H2O2Hi RDS1 -
1pyi_N5 SIP4_SM SIP4 -
2ere UGA3_RAPA UGA3* -
1pyi_N10 CHA4_SM CHA4 -
1pyi_N12 THI2_Thi- THI2 -
2ere_N23 WAR1_YPD WAR1 -
1a0a PHO4_Pi- PHO4 -
1an2 CBF1_SM CBF1 -
1nkp INO2_YPD INO2 -
1nkp INO4_YPD INO4 -
RTG1_RTG3 RTG1_RAPA RTG1 -
RTG1_RTG3 RTG3_RAPA RTG3 -
1am9 TYE7_YPD TYE7 -
1an2 TYE7_YPD TYE7 -
1am9 HMS1_YPD HMS1 -
1an2 HMS1_YPD HMS1 -
1ysa GCN4_SM GCN4 -
1gd2_short CAD1_YPD CAD1 -
1gd2 CIN5_H2O2Lo CIN5 -
1gd2_short YAP1_H2O2Lo YAP1 -
1gd2_short YAP3_YPD YAP3* -
1gd2_short YAP5_YPD YAP5 -
1gd2 YAP6_YPD YAP6 -
1gd2_short YAP7_H2O2Hi YAP7 -
1gd2 YAP7_H2O2Hi YAP7 -
1gd2_short ARR1_YPD ARR1 -
1dh3 ACA1_YPD ACA1 -
1dh3 CST6_YPD CST6 -
1dh3 SKO1_YPD SKO1 -
1dh3 HAC1_YPD HAC1 -
2dgc MET28_YPD MET28* -
1mnm_MCM1 MCM1_Alpha MCM1 -
1mnm_MCM1 ARG80_YPD ARG80 -
1egw RLM1_YPD RLM1 -
1egw SMP1_YPD SMP1* -
1mnn NDT80_SGD NDT80 -
1ign RAP1_YPD RAP1 -
1w0t_A REB1_YPD REB1 -
4gat DAL80_RAPA DAL80* -
4gat GAT1_RAPA GAT1 -
4gat GLN3_RAPA GLN3 -
4gat GZF3_RAPA GZF3* -
6gat GAT3_YPD GAT3 -
6gat ASH1_BUT14 ASH1 -
3hts HSF1_H2O2Lo HSF1 -
3hts MGA1_YPD MGA1 -
3hts SKN7_H2O2Lo SKN7 -
1b8i CUP9_YPD CUP9 -
1fjl PHO2_YPD PHO2 -
2c6y FKH1_YPD FKH1 -
2c6y FKH2_YPD FKH2 -
2c6y FHL1_YPD FHL1 -
1dp7 RFX1_YPD RFX1 -
1j47 ROX1_YPD ROX1 -
-------- -------- -------- -------- -------- --------
1hwt_CGG_N3 ARG80_YPD ARG80 -
1ysa ARG80_YPD ARG80 -
1mnm_MCM1 ARG81_SM ARG81 -
1ysa ARG81_SM ARG81 -
2dgc CBF1_SM CBF1 -
1an2 MET28_YPD MET28* -
1an2 MET4_SM MET4 -
2dgc MET4_SM MET4 -
1mnm YHP1_YPD YHP1* -
1mnm YOX1_YPD YOX1 -
1ysa RTG1_RAPA RTG1 -
1ysa RTG3_RAPA RTG3 -